Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols
In recent years, RNA-sequencing (RNA-seq) has emerged as a powerful technology for
transcriptome profiling. For a given gene, the number of mapped reads is not only dependent on …
transcriptome profiling. For a given gene, the number of mapped reads is not only dependent on …
Mediator and cohesin connect gene expression and chromatin architecture
MH Kagey, JJ Newman, S Bilodeau, Y Zhan… - Nature, 2010 - nature.com
Transcription factors control cell-specific gene expression programs through interactions
with diverse coactivators and the transcription apparatus. Gene activation may involve DNA …
with diverse coactivators and the transcription apparatus. Gene activation may involve DNA …
Hi–C: a comprehensive technique to capture the conformation of genomes
We describe a method, Hi–C, to comprehensively detect chromatin interactions in the
mammalian nucleus. This method is based on Chromosome Conformation Capture, in which …
mammalian nucleus. This method is based on Chromosome Conformation Capture, in which …
Organization of the mitotic chromosome
Mitotic chromosomes are among the most recognizable structures in the cell, yet for over a
century their internal organization remains largely unsolved. We applied chromosome …
century their internal organization remains largely unsolved. We applied chromosome …
Influences of dietary oils and fats, and the accompanied minor content of components on the gut microbiota and gut inflammation: A review
Z Ye, YJ Xu, Y Liu - Trends in Food Science & Technology, 2021 - Elsevier
Background The processing of dietary lipids in the intestinal lumen involves metabolic
processes of the host and also of the microbial organisms that reside in the gut. Whereas, in the …
processes of the host and also of the microbial organisms that reside in the gut. Whereas, in the …
Polyphenolic compounds from rapeseeds (Brassica napus L.): The major types, biofunctional roles, bioavailability, and the influences of rapeseed oil processing …
Z Ye, Y Liu - Food Research International, 2023 - Elsevier
The rapeseed (Brassica napus L.) are the important oil bearing material worldwide, which
contain wide variety of bioactive components with polyphenolic compounds considered the …
contain wide variety of bioactive components with polyphenolic compounds considered the …
[HTML][HTML] Patterns of growth and decline in lung function in persistent childhood asthma
Background Tracking longitudinal measurements of growth and decline in lung function in
patients with persistent childhood asthma may reveal links between asthma and subsequent …
patients with persistent childhood asthma may reveal links between asthma and subsequent …
[PDF][PDF] Genome-wide maps of nuclear lamina interactions in single human cells
Mammalian interphase chromosomes interact with the nuclear lamina (NL) through hundreds
of large lamina-associated domains (LADs). We report a method to map NL contacts …
of large lamina-associated domains (LADs). We report a method to map NL contacts …
Total serum cholesterol levels and mortality risk as a function of age: a report based on the Framingham data
RA Kronmal, KC Cain, Z Ye… - Archives of internal …, 1993 - jamanetwork.com
Objective: To evaluate the relationship between serum cholesterol level and all-cause,
coronary heart disease (CHD), and non-CHD mortality as a function of age. Methods: The data …
coronary heart disease (CHD), and non-CHD mortality as a function of age. Methods: The data …
Structural organization of the inactive X chromosome in the mouse
X-chromosome inactivation (XCI) involves major reorganization of the X chromosome as it
becomes silent and heterochromatic. During female mammalian development, XCI is …
becomes silent and heterochromatic. During female mammalian development, XCI is …